Plots a heatmap with either euclidean or cor distance; ANOVA or no ANOVA

Plots a heatmap with either euclidean or cor distance; ANOVA or no ANOVA

Usage

plotHeatmaps(
  experiment = c("SWATH", "TMT"),
  data,
  Group,
  dist,
  Anova.idx = NULL,
  useAnova = FALSE
)

Arguments

experiment

SWATH or TMT at the moment

data

ion data: either in the format of a list of normalised ion data matrix from TMT, or prot.ag (table with Protein name and intensities by group) in SWATH

Group

Group for the labels

dist

distance function either [euclidean or cordist]

Anova.idx

index of where significant ANOVA values are

useAnova

whether ANOVA has been preformed