Plotting any APAF boxplots. To be done using ggplot, and take in any experiment type

Plotting any APAF boxplots. To be done using ggplot, and take in any experiment type

Usage

plotBoxPlots(
  experiment = c("SWATH", "TMT"),
  data,
  normalisation,
  design,
  Group
)

Arguments

experiment

the experiment type

data

for TMT this is the ion data matrix

normalisation

The types of normalisation from APAFunctions::normalise() should be listed here, but those are yet to be finalised

design

the processed design file object that contains labels

Group

groups that is represented as factors