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An APAF wrapper for t.test() that works for both proteins and peptides

applyttest.Rd

An APAF wrapper for t.test() that works for both proteins and peptides

Usage

applyttest(
  data,
  Group,
  PeporProt = c("Peptide", "Protein"),
  doLogs = TRUE,
  numerator = levels(Group)[1]
)

Arguments

data

input matrix, is as subset of either prot.ag or pep.ag

Group

Group for the labels

PeporProt

Specify 'Protein' or 'Peptide' depending on which type of matrix is being used

doLogs

take the log() of the matrix. Defaults to TRUE

numerator

the Group for the comparison, defaults to levels(Group[1])